Supplementary Material for

Manually annotated evaluation data set

• Manually annotated evaluation data set
• Description of the file format

Relation restriction terms

word-stem:word 1|word 2| ....

abolish:abolished|abolishment|abolish|abolishes|abolition|abolishing
abrogat:abrogate|abrogates|abrogation|abrogates
acceler:accelerate|accelerates|accelerated|accelerating|acceleration
accelerat:accelerated|accelerate|accelerator|accelerates|acceleratory|accelerating|acceleration
accumul:accumulate|accumulates|accumulation|accumulated
acetylat:acetylator|acetylations|acetylated|acetylation|acetylate|acetylating|acetylates|acetylatable
acquir:acquired|acquirement|acquiring|acquires|acquire
act:acting|acts|act
activ:active|activity|activities
activat:activations|activates|activatory|activational|activation|activated|activate|activator|activating|activatable|activators
adapt:adapter|adapters
add:add|adds|added|adding
addit:addition|additions
adhe:adhere|adheres|adherence|adhesion
adher:adhere|adheres|adhered|adherance
affect:affective|affected|affect|affects|affection|affecting
aggregat:aggregatory|aggregations|aggregate|aggregative|aggregates|aggregating|aggregat|aggregated|aggregation
agoni:agonism|agonise|agonistic|agonimus|agonists|agonist|agonises
alter:alternations|alternatives|alteration|alter|alternation|alternative|alternated|alternate|alterations|altering|alters|alternating|altered
amplif:amplifying|amplification|amplify|amplifier|amplified|amplifiers
antagoni:antagonisms|antagonist|antagonism|antagonistic|antagonize|antagonists|antagonised
apparat:apparatus
assembl:assemble|assembles|assembly|assemblies|assembling
assist:assist|assists|assisting|assistance|assisted
associat:associated|associating|associates|associate|associational|association|associations|associative
attach:attach|attaches|attached|attachment
attack:attacking|attacks|attack|attacked
attenuat:attenuate|attenuator|attenuation|attenuates|attenuating|attenuated|attenuative
augment:augmented|augmenting|augment|augmentary|augmentative|augmentation|augmentations|augments|augmentory|augmenter
autophosphorylat:autophosphorylated|autophosphorylation|autophosphorylates|autophosphorylate
autoregulat:autoregulation|autoregulated|autoregulate|autoregulates|autoregulatory
bind:bind|binder|binders|binds|binding
block:blockable|blocked|blocks|blockades|blockers|blockade|blockaded|block|blocker|blocking
bound:boundary|boundaries|bounds|bounded|bound
carboxyl:carboxylating|carboxylation|carboxylmethylation|carboxylates|carboxylated|carboxylases|carboxylate
cataly:catalyses|catalysing|catalytically|catalyzed|catalytic|catalyzing|catalyst|catalysis|catalyze|catalysts|catalysed|catalyse|catalytical|catalyzes
cleav:cleavages|cleavable|cleaved|cleavage|cleaves|cleaving|cleave|clove
cluster:cluster
co-operat:co-operative|co-operates|co-operate|co-operated|co-operation|co-operating
co-precipit:co-precipitation|co-precipitate|co-precipitated|co-precipitates|co-precipitating
co-purifi:co-purificates|co-purificated|co-purificate|co-purification
coactivat:coactivate|coactivation|coactivating|coactivator|coactivated|coactivates|coactivators
coexist:coexisted|coexisting|coexistent|coexistence|coexist|coexists
coexpres:coexpression|coexpressed|coexpresses
colocaliz:colocalizing|colocalizes|colocalized|colocalization|colocalize|colocalizations
compet:competent|competed|competitiveness|competitive|competes|competitor|competency|competition|compete|competitors|competing|competence
complex:complexation|complexity|complexities|complex|complexing|complexes|complexed
component:component
compris:comprise|comprises|comprised
conjugat:conjugates|conjugational|conjugating|conjugations|conjugated|conjugative|conjugate|conjugation
contact:contact|contacted|contacts
contain:contain|contains|contained|containing
control:controller|control|controlling|controls|controlled
convers:converse|converses|conversion|conversed
convert:converts|convertion|converted|convert|converting
cooperat:cooperative|cooperates|cooperate|cooperated|cooperation|cooperating
coprecipit:coprecipitation|coprecipitate|coprecipitated|coprecipitates|coprecipitating
copurifi:copurificates|copurificated|copurificate|copurification
correlat:correlation|correlate|correlated|correlating|correlations|correlates
counteract:counteract|counteracts|counteracted|counteraction
coupl:coupling|couplers|couple|coupled|coupler
cross-link:cross-link|cross-links|cross-linked|cross-linkage|cross-linkages
cross-talk:cross-talk|cross-talked|cross-talking
crosslink:crosslinkage|crosslinked|crosslinker|crosslinking|crosslinkable|crosslink|crosslinks|crosslinkers
crosstalk:crosstalk|crosstalked|crosstalking
deacetylat:deacetylates|deacetylation|deacetylate|deacetylated
declin:declining|declines|decline|declined
decreas:decrease|decreasing|decreased|decreases
degrad:degradative|degrade|degradability|degradable|degrades|degrading|degradation|degraded|degradations
depend:dependent|dependant|dependence|dependences|dependencies|depended|dependently|dependency|depending|depends|depend|dependent
dephosphorylat:dephosphorylating|dephosphorylated|dephosphorylate|dephosphorylation|dephosphorylates
deplet:deplete|depletes|depleted|depletion
deposi:deposit|deposits|deposited|deposition
depress:depressing|depression|depressants|depresses|depressed|depress
deriv:derive|derived|derives
destruct:destructively|destruct|destruction|destructive
dimer:dimer|dimerize|dimerizes|dimerization|dimerise|dimerises|dimerisation
diminish:diminished|diminishes|diminishing|diminish|diminishment
dissociat:dissociated|dissociative|dissociation|dissociating|dissociate|dissociates
down-regulat:down-regulating|down-regulators|down-regulator|down-regulation|down-regulatory|down-regulate|down-regulated|down-regulates
downregulat:downregulated|downregulator|downregulatory|downregulating|downregulates|downregulate|downregulation|downregulators
effect:effective|effect|effects|effecting|effectual|effectiveness|effected
elevat:elevating|elevation|elevates|elevated|elevate
encod:encoded|encode|encoding|encodes
enhanc:enhancers|enhancements|enhancement|enhancer|enhance|enhancing|enhanced|enhances
enrich:enrich|enriches|enrichment|enriching
exert:exert|exerts|exertion|exerting
exhibit:exhibits|exhibit|exhibited
expos:expose|exposes|exposed|exposition|exposing
express:expressed|expressible|expresses|express|expression|expressive|expressions|expressing
form:forms|formations|formation|formed|form|formability|forming
functio:function|functions
fuse:fuse|fuses|fused|fusion
generat:generator|generations|generated|generates|generation|generating|generate
glucosyl:glucosylate|glucosylated|glucosylates|glucosylation|glucosylations|glucosylating
glycosyl:glycosylate|glycosylated|glycosylates|glycosylation|glycosylations|glycosylating
heterodimer:heterodimer|heterodimerize|heterodimerizes|heterodimerization|heterodimerise|heterodimerises|heterodimerisation
hydrol:hydrolysed|hydrolysis|hydrolyses|hydrolytic|hydrolyze|hydrolysing|hydrolyzing|hydrolyse|hydrolyzes|hydrolyzed
hyperexpr:hyperexpresses|hyperexpressed|hyperexpression|hyperexpress
imitat:imitation|imitate|imitating|imitations|imitated
immuno-precipit:immuno-precipitation|immuno-precipitate|immuno-precipitated|immuno-precipitates|immuno-precipitating
immunoprecipit:immunoprecipitation|immunoprecipitate|immunoprecipitated|immunoprecipitates|immunoprecipitating
import:import|imports|importing
improv:improvements|improves|improved|improving|improve|improvement
inactivat:inactivate|inactivator|inactivators|inactivated|inactivating|inactivations|inactivation|inactivates
includ:include|included|includes
increas:increasing|increase|increased|increases
increment:increments|incremented|incremental|increment
induc:induction|inducing|inducement|induce|inducible|inductions|inducer|induced|induceable|induces
influenc:influencing|influences|influence|influenced
inhibit:inhibitions|inhibiton|inhibiting|inhibitors|inhibition|inhibited|inhibitory|inhibits|inhibit|inhibitive|inhibitor
initiat:initiate|initiates|initiated|initiating|initiation|initiations
interact:interacts|interactions|interactor|interact|interacted|interactors|interactively|interactive|interacting|interaction
interfer:interfere|interference|interfered|interfering|interferes
interrupt:interrupting|interrupted|interrupts|interruption|interrupt|interruptions
ligand:ligand|ligands
mediat:mediators|mediator|mediate|mediating|mediates|mediation|mediated
migrat:migrate|migrates|migrated|migration
mobili:mobilises|mobility|mobilising|mobilised|mobilisations|mobilise|mobilized|mobilize|mobilizes|mobilization|mobilisation|mobilizing|mobilizations
moderat:moderation|moderate|moderated|moderating|moderates
modif:modifiers|modify|modification|modifications|modifier|modified|modifies|modifying
modulat:modulate|modulators|modulatory|modulaters|modulating|modulation|modulated|modulator|modulations|modulates
neutrali:neutralized|neutralizer|neutralizing|neutralize|neutralises|neutralise|neutralization|neutralizations|neutralizes|neutralisation|neutralised|neutralising|neutrality
obstruct:obstruct|obstructs|obstructed|obstruction
operat:operated|operating|operational|operator|operate|operations|operative|operators|operates|operation
oppos:oppose|opposed|opposes|opposing|opposite|opposition
overexpress:overexpresses|overexpression|overexpressing|overexpressions|overexpress|overexpressed
overproduc:overproduce|overproduced|overproduces|overproducing|overproduction|overproductions
oxidis:oxidise|oxidised|oxidises|oxidation|oxidising|oxidizing
oxidiz:oxidizes|oxidized|oxidation|oxidize|oxidizing
phosphorylat:phosphorylated|phosphorylations|phosphorylating|phosphorylate|phosphorylation|phosphorylates
potentiat:potentiates|potentiation|potentiators|potentiate|potentiator|potentiated|potentiating
prevent:preventative|prevents|prevention|preventing|preventive|preventable|prevent|prevented
process:process|processes|processing|processed
produc:producibility|productively|productive|productions|production|producers|produced|productivity|product|producer|produces|products|producing|produce
prohibit:prohibit|prohibiting|prohibition|prohibitively|prohibits|prohibited
promot:promoting|promote|promoter|promoters|promotion|promoted|promotes
react:react|reactivities|reactivated|reactor|reactivty|reacts|reactions|reaction|reacted|reactive|reactors|reactivity|reacting|reactants
recogni:recognizes|recognized|recognize|recognition|recognizing|recognizable|recognised
recruit:recruitment|recruiting|recruitable|recruits|recruit|recruiter|recruited
reduc:reductants|reductions|reduces|reducing|reductant|reduced|reduce|reduction
regulat:regulative|regulates|regulating|regulations|regulate|regulator|regulated|regulatory|regulation|regulators|regulon
releas:released|releasing|release|releases
remov:removes|removable|remove|removed|removal|removing
replac:replaced|replace|replaces|replacements|replacing|replacement
repress:repressors|repressive|represses|repress|repressor|repressing|repressed|repression|repressions
requir:requiring|requires|require|required
respond:respond|responded|responds|responder|respondent|responders|respondents|responding
respons:responsive|responsiveness|response|responses|responsing
result:result|resulted|resulting|results
secret:secret|secreting|secretion|secretary|secretions|secretes|secrete|secretors|secreted|secretory
sever:severs|severed|sever
signal:signal|signals|signaled|signaling
splice:splice|splices|spliced|splicing
stabili:stabilises|stabilized|stability|stabilizes|stabilizer|stabilisation|stabilising|stabilised|stabilizers|stabilities|stabilise|stabilize|stabilizing|stabilization|stabiliser
stimulat:stimulated|stimulation|stimulating|stimulates|stimulatory|stimulations|stimulate|stimulator|stimulators
subunit:subunit|subunits
suppress:suppressed|suppress|suppressor|suppresser|suppression|suppressive|suppresssion|suppressibility|suppressant|suppresses|suppressions|suppressing|suppressible|suppressors
suspend:suspend|suspends|suspended|suspending
synthesis:synthesise|synthesising|synthesis|synthesised
target:target|targets|targeted
transactivat:transactivated|transactivator|transactivates|transactivation|transactivators|transactivating|transactivate
transcri:transcription|transcribe|transcribed|transcribes|transcriptions|transcribing|transcript
transduc:transduce|transductions|transducing|transduction|transducible|transducer|transduced|transducers|transduces|transductional
translat:translationally|translations|translate|translated|translates|translating|translation|translational|translatable
translocat:translocating|translocated|translocation|translocational|translocations|translocates|translocate|translocator
transport:transport|transports|transporting
transregulat:transregulation|transregulated|transregulate|transregulates|transregulatory
trigger:triggering|trigger|triggers|triggered
up-regulat:up-regulatory|up-regulation|up-regulator|up-regulating|up-regulates|up-regulate|up-regulators|up-regulations|up-regulated
upregulat:upregulator|upregulates|upregulation|upregulators|upregulatory|upregulating|upregulated|upregulate
us:use|uses|used|using
utilis:utilising|utilises|utilised|utilisation|utilise
utiliz:utilized|utilization|utilizing|utilize|utilizes
yield:yield|yields|yielded